ColiCoords
stable
Contents:
Installation
Introduction
Batch Processing
Coordinate Optimization
Processing of SMLM data
Indexing
Aligning Cells
Configuration
Module Documentation
ColiCoords
Docs
»
Index
Edit on GitHub
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
V
|
X
|
Y
A
a0 (colicoords.cell.Coordinates attribute)
a1 (colicoords.cell.Coordinates attribute)
a2 (colicoords.cell.Coordinates attribute)
add_data() (colicoords.data_models.Data method)
append() (colicoords.cell.CellList method)
area (colicoords.cell.Cell attribute)
(colicoords.cell.CellList attribute)
B
bf_img (colicoords.data_models.Data attribute)
binary_img (colicoords.data_models.Data attribute)
BinaryImage (class in colicoords.data_models)
BrightFieldImage (class in colicoords.data_models)
C
calc_lc() (colicoords.cell.Coordinates method)
(in module colicoords.cell)
calc_perimeter() (colicoords.cell.Coordinates method)
calc_phi() (colicoords.cell.Coordinates method)
calc_rc() (colicoords.cell.Coordinates method)
calc_xc() (colicoords.cell.Coordinates method)
calc_xc_mask() (colicoords.cell.Coordinates method)
calc_xc_masked() (colicoords.cell.Coordinates method)
Cell (class in colicoords.cell)
CellBinaryFunction (class in colicoords.fitting)
CellImageFunction (class in colicoords.fitting)
CellList (class in colicoords.cell)
CellListData (class in colicoords.data_models)
CellListPlot (class in colicoords.plot)
CellMinimizeFunctionBase (class in colicoords.fitting)
CellPlot (class in colicoords.plot)
CellSTORMMembraneFunction (class in colicoords.fitting)
circumference (colicoords.cell.Cell attribute)
(colicoords.cell.CellList attribute)
colicoords.cell (module)
colicoords.data_models (module)
colicoords.fileIO (module)
colicoords.fitting (module)
colicoords.plot (module)
Coordinates (class in colicoords.cell)
copy() (colicoords.cell.Cell method)
(colicoords.cell.CellList method)
(colicoords.data_models.Data method)
D
Data (class in colicoords.data_models)
dclasses (colicoords.data_models.CellListData attribute)
(colicoords.data_models.Data attribute)
DepCellFit (class in colicoords.fitting)
E
execute() (colicoords.cell.CellList method)
(colicoords.fitting.LinearModelFit method)
execute_mp() (colicoords.cell.CellList method)
F
figure() (colicoords.plot.CellListPlot static method)
(colicoords.plot.CellPlot static method)
FluorescenceImage (class in colicoords.data_models)
full_transform() (colicoords.cell.Coordinates method)
G
get_core_points() (colicoords.cell.Coordinates method)
get_idx_xc() (colicoords.cell.Coordinates method)
get_intensity() (colicoords.cell.Cell method)
(colicoords.cell.CellList method)
H
hist_intensity() (colicoords.plot.CellListPlot method)
hist_l_storm() (colicoords.plot.CellListPlot method)
(colicoords.plot.CellPlot method)
hist_phi_storm() (colicoords.plot.CellListPlot method)
(colicoords.plot.CellPlot method)
hist_property() (colicoords.plot.CellListPlot method)
hist_r_storm() (colicoords.plot.CellListPlot method)
(colicoords.plot.CellPlot method)
I
imshow() (colicoords.plot.CellPlot method)
L
l_classify() (colicoords.cell.Cell method)
(colicoords.cell.CellList method)
l_dist() (colicoords.cell.Cell method)
(colicoords.cell.CellList method)
lc (colicoords.cell.Coordinates attribute)
length (colicoords.cell.Cell attribute)
(colicoords.cell.CellList attribute)
(colicoords.cell.Coordinates attribute)
LinearModelFit (class in colicoords.fitting)
load() (in module colicoords.fileIO)
load_thunderstorm() (in module colicoords.fileIO)
M
measure_r() (colicoords.cell.Cell method)
(colicoords.cell.CellList method)
MetaData (class in colicoords.data_models)
N
name (colicoords.cell.CellList attribute)
names (colicoords.data_models.CellListData attribute)
(colicoords.data_models.Data attribute)
O
optimize() (colicoords.cell.Cell method)
(colicoords.cell.CellList method)
optimize_mp() (colicoords.cell.CellList method)
optimize_worker() (in module colicoords.cell)
orientation (colicoords.data_models.BinaryImage attribute)
(colicoords.data_models.BrightFieldImage attribute)
(colicoords.data_models.FluorescenceImage attribute)
P
p() (colicoords.cell.Coordinates method)
p_dx() (colicoords.cell.Coordinates method)
phi (colicoords.cell.Coordinates attribute)
phi_dist() (colicoords.cell.Cell method)
(colicoords.cell.CellList method)
plot_bin_fit_comparison() (colicoords.plot.CellPlot method)
plot_binary_img() (colicoords.plot.CellPlot method)
plot_kymograph() (colicoords.plot.CellListPlot method)
(colicoords.plot.CellPlot method)
plot_l_class() (colicoords.plot.CellListPlot method)
(colicoords.plot.CellPlot method)
plot_l_dist() (colicoords.plot.CellListPlot method)
(colicoords.plot.CellPlot method)
plot_midline() (colicoords.plot.CellPlot method)
plot_outline() (colicoords.plot.CellPlot method)
plot_phi_dist() (colicoords.plot.CellListPlot method)
(colicoords.plot.CellPlot method)
plot_r_dist() (colicoords.plot.CellListPlot method)
(colicoords.plot.CellPlot method)
plot_simulated_binary() (colicoords.plot.CellPlot method)
plot_storm() (colicoords.plot.CellPlot method)
prune() (colicoords.data_models.Data method)
Q
q() (colicoords.cell.Coordinates method)
R
r_dist() (colicoords.cell.Cell method)
(colicoords.cell.CellList method)
RadialData (class in colicoords.fitting)
radius (colicoords.cell.Cell attribute)
(colicoords.cell.CellList attribute)
rc (colicoords.cell.Coordinates attribute)
reconstruct_image() (colicoords.cell.Cell method)
rev_calc_perimeter() (colicoords.cell.Coordinates method)
rev_transform() (colicoords.cell.Coordinates method)
rotate() (colicoords.data_models.Data method)
S
save() (in module colicoords.fileIO)
savefig() (colicoords.plot.CellListPlot static method)
(colicoords.plot.CellPlot static method)
shape (colicoords.data_models.CellListData attribute)
show() (colicoords.plot.CellListPlot static method)
(colicoords.plot.CellPlot static method)
solve_general() (in module colicoords.cell)
solve_length() (in module colicoords.cell)
solve_linear_system() (in module colicoords.fitting)
solve_trig() (in module colicoords.cell)
STORMTable (class in colicoords.data_models)
sub_par() (colicoords.cell.Coordinates method)
surface (colicoords.cell.Cell attribute)
(colicoords.cell.CellList attribute)
T
target_data (colicoords.fitting.CellSTORMMembraneFunction attribute)
transform() (colicoords.cell.Coordinates method)
V
volume (colicoords.cell.Cell attribute)
(colicoords.cell.CellList attribute)
X
x_coords (colicoords.cell.Coordinates attribute)
xc (colicoords.cell.Coordinates attribute)
xc_mask (colicoords.cell.Coordinates attribute)
xc_masked (colicoords.cell.Coordinates attribute)
Y
y_coords (colicoords.cell.Coordinates attribute)
yc (colicoords.cell.Coordinates attribute)
Read the Docs
v: stable
Versions
latest
stable
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.